| Episodes |
| # | Title | Air Date |
| 51 | Laws and Promises | Sat 18 Mar '06 |
| 50 | Death | Sun 12 Mar '06 |
| 49 | The Other Side of the Gate | Sat 04 Mar '06 |
| 48 | Goodbye | Sat 25 Feb '06 |
| 47 | Sealing the Homunculus | Sat 18 Feb '06 |
| 46 | Human Transmutation | Sat 11 Feb '06 |
| 45 | A Rotted Heart | Sat 04 Feb '06 |
| 44 | Hohenheim of Light | Sat 28 Jan '06 |
| 43 | The Stray Dog | Sat 21 Jan '06 |
| 42 | His Name is Unknown | Sat 14 Jan '06 |
| 41 | Holy Mother | Sat 07 Jan '06 |
| 40 | The Scar | Sat 17 Dec '05 |
| 39 | Secrets of Ishbal | Sat 10 Dec '05 |
| 38 | With the River's Flow | Sat 03 Dec '05 |
| 37 | The Flame Alchemist, The Bachelor Lieutenant, & The Mystery of Warehouse 13 | Sat 26 Nov '05 |
| 36 | The Sinner Within | Sat 19 Nov '05 |
| 35 | Reunion of the Fallen | Sat 12 Nov '05 |
| 34 | Theory of Avarice | Sat 05 Nov '05 |
| 33 | Al, Captured | Sat 29 Oct '05 |
| 32 | Dante of the Deep Forest | Sat 22 Oct '05 |
| 31 | Sin | Sat 15 Oct '05 |
| 30 | Assault on South Headquarters | Sat 08 Oct '05 |
| 29 | The Untainted Child | Sat 01 Oct '05 |
| 28 | All is One, One is All | Sat 24 Sep '05 |
| 27 | Teacher | Sat 17 Sep '05 |
| 26 | Her Reason | Sat 07 May '05 |
| 25 | Words of Farewell | Sat 30 Apr '05 |
| 24 | Bonding Memories | Sat 23 Apr '05 |
| 23 | Heart of Steel | Sat 16 Apr '05 |
| 22 | Created Human | Sat 09 Apr '05 |
| 21 | The Red Glow | Sat 02 Apr '05 |
| 20 | Soul of the Guardian | Sat 26 Mar '05 |
| 19 | The Truth Behind Truths | Sat 19 Mar '05 |
| 18 | Marcoh's Notes | Sat 12 Mar '05 |
| 17 | House of the Waiting Family | Sat 05 Mar '05 |
| 16 | That Which Is Lost | Sat 26 Feb '05 |
| 15 | The Ishbal Massacre | Sat 19 Feb '05 |
| 14 | Destruction's Right Hand | Sat 12 Feb '05 |
| 13 | Fullmetal vs. Flame | Sat 05 Feb '05 |
| 12 | The Other Brothers Elric (Part 2) | Sat 29 Jan '05 |
| 11 | The Other Brothers Elric (Part 1) | Sat 22 Jan '05 |
| 10 | The Phantom Thief | Sat 15 Jan '05 |
| 9 | Be Thou for the People | Sat 08 Jan '05 |
| 8 | The Philosopher's Stone | Sat 01 Jan '05 |
| 7 | Night of the Chimera's Cry | Sat 18 Dec '04 |
| 6 | The Alchemy Exam | Sat 11 Dec '04 |
| 5 | The Man with the Mechanical Arm | Sat 04 Dec '04 |
| 4 | A Forger's Love | Sat 27 Nov '04 |
| 3 | Mother | Sat 20 Nov '04 |
| 2 | Body of the Sanctioned | Sat 13 Nov '04 |
| 1 | To Challenge the Sun | Sat 06 Nov '04 |
